PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 86048
Common NameSELMODRAFT_86048
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ZF-HD
Protein Properties Length: 94aa    MW: 9615.61 Da    PI: 7.3038
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
86048genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer59.67.1e-192067456
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                  rY  C++NhA   Gg+ +DGC+Ef ++       ++  C+ACgCHR+FH + 
        86048 20 QRYGACKRNHALGNGGYLLDGCQEFDTD-----CETSKICSACGCHRSFHTKI 67
                 69***********************997.....347899***********885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-81666IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.3E-152166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.4242267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASQKRAPDP IAAKASAPSQ RYGACKRNHA LGNGGYLLDG CQEFDTDCET SKICSACGCH  60
RSFHTKIGDN PGSTGAGFSE GLLDPPASPG DSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966706.12e-63hypothetical protein SELMODRAFT_86048
SwissprotA2YWA66e-12ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB906e-12ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLD8R4V02e-63D8R4V0_SELML; Putative uncharacterized protein
STRINGEFJ327336e-63(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-13mini zinc finger 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]